PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00191.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 305aa    MW: 34615.8 Da    PI: 5.3289
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00191.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18112162255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrd + ng   r++lg+f taeeAa a+++a+ k++g
  Rsa1.0_00191.1_g00001.1 112 KYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFQTAEEAAMAYDKAAVKIRG 162
                              8********.**********44465..***********************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-29111171IPR001471AP2/ERF domain
PROSITE profilePS5103222.682112171IPR001471AP2/ERF domain
PfamPF008473.9E-12112162IPR001471AP2/ERF domain
CDDcd000181.53E-28112171No hitNo description
SuperFamilySSF541711.31E-20112172IPR016177DNA-binding domain
SMARTSM003801.0E-35112177IPR001471AP2/ERF domain
PRINTSPR003677.0E-11113124IPR001471AP2/ERF domain
PRINTSPR003677.0E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAFGNIVQEP DREILKNVWE NFIRKPDQTD TRSVHVQEVS TTWEALPTLD DIPKHSKRSL  60
PSLDYMSMEA KEWAEILDSI SSFPSETNRD MLLTNPTGSR SLPSPVSCKT RKYRGVRRRP  120
WGKFAAEIRD STRNGVRVWL GTFQTAEEAA MAYDKAAVKI RGIQRAHTNF QLETVIKAME  180
MDCGSSYYPI NRSSSTSRPI RNHRETGGKD AIGAYGDRVV DGMVDNGCAF SYCSTQESLG  240
LVGNEEAWLG SRKRQRRDED CIMLQEVEID DKKMGSRGEE KCDVFGLFEF EEFGSDYLDT  300
LLSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23109172264ATERF1
3gcc_A2e-23109172264ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013670492.10.0PREDICTED: ethylene-responsive transcription factor ERF091-like
SwissprotO495151e-139ERF91_ARATH; Ethylene-responsive transcription factor ERF091
TrEMBLA0A078J4611e-173A0A078J461_BRANA; BnaC01g40920D protein
TrEMBLM4DA001e-176M4DA00_BRARP; Uncharacterized protein
STRINGBra013310.1-P1e-175(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-130ERF family protein